In the commonly used genome sequencing pipelines, dynamic programming (DP) algorithms are widely used, including read alignment and variant calling in reference-guided alignment, layout and polishing ...

The rapid mutation of viruses, such as SARS-CoV-2, highlights the urgent need for fast and precise genomic sequencing. The traditional sequencing technique maps the DNA fragments collected from an ...

Course Description This course is part three of a specialization on algorithms and data structures. It covers basic algorithm design techniques such as divide and conquer, dynamic programming, and ...

The Smith-Waterman algorithm is a dynamic programming algorithm to find the optimal alignment of two sequences. This repository provides a basic implementation of the Smith-Waterman algorithm that has ...

For these situations, AnchorWave either identifies novel anchors within long interanchor regions (Fig. 1, step 3) or, for those that cannot be split by novel anchors, aligns them using either the ...

RL, Blundell noted, is basically a graph algorithm. It’s a dynamic programming update and it’s closely related to a shortest path algorithm — it’s like an online shortest path algorithm.