A predictive biophysical model that integrates protein-DNA structures and sequences to accurately determine genomic binding sites and affinities of DNA-binding proteins.

Map is a common way to transform lists in most programming languages. In Python, map is a function that loops over a list and applies a function (that you provide) to each item. Your function receives ...

Here we use cryogenic electron microscopy to determine the structure of TbAQP2 from Trypanosoma brucei, bound to either the substrate glycerol or to the sleeping sickness drugs, pentamidine or ...

UniProt-PDB mapper Quick mapping of UniProt sequences to PDB structures This script maps residue numbering and chains between a UniProt ID and a PDB structure. It can also find all structures or the ...

PyQuake3D A Python tool for 3-D earthquake sequence simulations of seismic and aseismic slip PyQuake3D is a high-performance Python-based Boundary Element Method (BEM) code for simulating sequences of ...

From Sequence To Structure: Fast Track For RNA Modeling Berkeley Lab In Biology 101, we learn that RNA is a single, ribbon-like strand of base pairs that is copied from our DNA then read like a recipe ...